No way. To remove a file from the repository with all its history, is impossible without cloning the project from scratch all developers.
That is on one specific repository, you can locally be deleted, but if another developer will just use the git fetch/pull, it does not removed, and the first git push, the story of his repository you will be back.
The only way to the Central repo and remove the file (you can use the library BFG), then ALL the developers, all jobs in teamsite/Jenkins removed the repository and doing git clone. Either launch yourself to the BFG.